aeruginosa. PA2951 (etfA), PA3687 (ppc), PA3758 (nagA), PA1183 (dctA), and PA1805 (ppiD) are homologous to genes previously shown to be essential in a limited number of bacterial species [20]. Interestingly, for the remaining 16 genes, no homologs have been reported as essential in other bacteria [20]. Among these, PA1709 (popD), coding for a subunit of the PopB/D translocon Roscovitine complex of the type III secretion-translocation

system (TTSS), is implicated in effector translocation across the host plasma membrane. Previous reports on P. aeruginosa PopD function [24–26] did not mention growth defects associated to deletion of popD gene. Therefore, the growth-impairing effects of S5A10 insert corresponding to PA1709 (Table 1) did not seem to match the PopD role characterized so far. These discrepancies could be due to differences in experimental conditions between our study and earlier works. We evaluated the set of 21 novel candidate essential genes for degree of conservation in Pseudomonas species according to the computationally-based analysis of orthologs of the Pseudomonas Genome Database [27] (Additional file 5: Table

S5). Interestingly, they are well-conserved in the sequenced Pseudomonas species, with the exceptions of PA5548 and PA1709 (popD) that are unique in P. aeruginosa. However, PA5548 and PA1709 (popD) orthologs buy Small molecule library can be found in other bacterial species. Remarkably, 17 of 21 novel essential candidates are conserved in all twelve sequenced P. aeruginosa genomes (Additional file 5: Table S5). Instead, PA2220 (oprR),

PA5264, PA1709 (popD) and PA3687 (ppc) are present in 3, 8, 9 and 10 of the sequenced genomes, respectively. Essential genes that are not fully conserved in all strains of a bacterial species can occur infrequently. As an example, the Escherichia coli genes ytfI, ypjF, ymfJ, ymfI and ymcD, coding for hypothetical proteins, were reported as essential in the K12-MG1655 strain [28, 29] and are conserved in only a limited number of the sequenced E. coli genomes [30]. Moreover, we compared the novel essential Decitabine candidates with a panel of “classical” essential genes that were not included in the Database of Essential Genes (DEG) [20] because of the occurence of Tn insertions in previous screenings in P. aeruginosa[9, 10, 23]. The Tn insertion patterns of the novel essential candidates (i.e. number of insertions and insertion site(s)- terminal vs internal; Additional file 5: Table S5) were similar to those of “classical” essential genes (Additional file 4: Table S4). This study also identified growth-impairing inserts carrying multiple genes. Because of their multigenic composition, the tagging of genes in these constructs for essentiality is not as direct as for single locus inserts (see above).